Motif Similarity Based on Affinity of Targets
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Enter motif set #1 (
Sample
)
Position-specific weight matrix (PWM) or Position-specific frequency matrix (PFM) in tab-delimited format. Example: Motif PITX1 Pos A C G T 1 0.19 0.27 0.11 0.43 2 0.05 0.01 0.00 0.94 3 0.88 0.04 0.06 0.01 4 0.99 0.00 0.00 0.01 5 0.02 0.02 0.13 0.84 6 0.06 0.86 0.01 0.07 7 0.04 0.77 0.03 0.15 8 0.23 0.41 0.14 0.22 The separating character between words must be
Or upload motif set #1
Compare it against database motifs
Motif set #1 will be compared to a pre-compiled list od DNA or RNA motifs from CIS-BP and CIS-BP-RNA using default parameters
Enter motif set #2 (
Sample
)
Position-specific weight matrix (PWM) or Position-specific frequency matrix (PFM) in tab-delimited format. Example: Motif PITX1 Pos A C G T 1 0.19 0.27 0.11 0.43 2 0.05 0.01 0.00 0.94 3 0.88 0.04 0.06 0.01 4 0.99 0.00 0.00 0.01 5 0.02 0.02 0.13 0.84 6 0.06 0.86 0.01 0.07 7 0.04 0.77 0.03 0.15 8 0.23 0.41 0.14 0.22 The separating character between words must be
Or upload motif set #2
Motif type
DNA
RNA
Sequence length
Sequence count